Co-expression analysis

Gene ID PtpAffx.135342.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g03270: DNA-binding protein, putative (HF=2e-40)
Module size 6 genes
NF 0.36
%ile 62.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.96PtpAffx.135342.1.S1_atCN550200hypothetical protein-2e-40At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.5078.60.97Ptp.4893.1.S1_s_atCV256447hypothetical protein-1e-13At1g66680AR401O.I.H.G.S.X.
0.4369.70.97PtpAffx.10892.2.S1_a_atCN520703hypothetical protein-3e-48At3g21640TWD1 (TWISTED DWARF 1)O.I.H.G.S.X.
0.3559.70.97PtpAffx.53470.1.S1_atBU879364hypothetical protein-6e-56At1g12050fumarylacetoacetase, putativeO.I.H.G.S.X.
0.2441.80.96Ptp.4562.1.S1_s_atCV261348hypothetical protein-1e-20At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)O.I.H.G.S.X.
0.2340.50.96PtpAffx.201300.1.S1_s_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27678.1.S1_at, orthologous to the query gene, PtpAffx.135342.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8393.4Ta.27678.1.S1_atAt2g03270--1e-9At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.4666.8Ta.13399.1.S1_a_atAt2g03270--1e-14At2g43070protease-associated (PA) domain-containing proteinO.I.H.G.S.X.
0.089.4Ta.28829.1.S1_atAt2g03270--9e+0At5g28295unknown proteinO.I.H.G.S.X.
0.012.4Ta.30768.3.S1_x_atAt2g03270high mobility group protein-4e-2At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)O.I.H.G.S.X.
0.012.4Ta.6867.1.S1_s_atAt2g03270--5e-18At3g61050NTMC2T4O.I.H.G.S.X.
0.012.4Ta.10139.1.S1_atAt2g03270ethylene receptor-like protein-2e-41At1g66340ETR1 (ETHYLENE RESPONSE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage