Co-expression analysis

Gene ID	PtpAffx.135342.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g03270: DNA-binding protein, putative (HF=2e-40)
Module size	6 genes
NF	0.36
%ile	62.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.96	PtpAffx.135342.1.S1_at	CN550200	hypothetical protein	-	2e-40	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.4893.1.S1_s_at	CV256447	hypothetical protein	-	1e-13	At1g66680	AR401	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.10892.2.S1_a_at	CN520703	hypothetical protein	-	3e-48	At3g21640	TWD1 (TWISTED DWARF 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	PtpAffx.53470.1.S1_at	BU879364	hypothetical protein	-	6e-56	At1g12050	fumarylacetoacetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.201300.1.S1_s_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27678.1.S1_at, orthologous to the query gene, PtpAffx.135342.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	Ta.27678.1.S1_at	At2g03270	-	-	1e-9	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.13399.1.S1_a_at	At2g03270	-	-	1e-14	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.28829.1.S1_at	At2g03270	-	-	9e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.30768.3.S1_x_at	At2g03270	high mobility group protein	-	4e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.6867.1.S1_s_at	At2g03270	-	-	5e-18	At3g61050	NTMC2T4	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.10139.1.S1_at	At2g03270	ethylene receptor-like protein	-	2e-41	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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