Co-expression analysis

Gene ID PtpAffx.135298.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g16490: MYB58 (MYB DOMAIN PROTEIN 58) (HF=1e+0)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.91PtpAffx.135298.1.A1_atCV232578hypothetical protein-1e+0At1g16490MYB58 (MYB DOMAIN PROTEIN 58)O.I.H.G.S.X.
0.5582.20.92PtpAffx.19734.2.A1_atCV248852--1e+0At5g26990drought-responsive family proteinO.I.H.G.S.X.
0.5078.60.92PtpAffx.249.205.A1_atCV245539hypothetical protein-3e-3At3g14020NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)O.I.H.G.S.X.
0.4369.70.92PtpAffx.73309.1.S1_a_atCV253817hypothetical protein-3e-11At2g22425peptidaseO.I.H.G.S.X.
0.3863.70.90PtpAffx.8582.1.S1_atCV262556--2e-1At1g19310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2950.50.91PtpAffx.4328.1.S1_a_atCX180970hypothetical protein-1e-5At1g56700pyrrolidone-carboxylate peptidase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage