Co-expression analysis

Gene ID PtpAffx.135056.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g39700: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=2e-4)
Module size 7 genes
NF 0.12
%ile 23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.80PtpAffx.135056.1.S1_atAJ769211--2e-4At4g39700heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.2950.50.83PtpAffx.120545.1.A1_atCV274841--2e+0At3g20400EMB2743 (EMBRYO DEFECTIVE 2743)O.I.H.G.S.X.
0.2136.50.85PtpAffx.223734.1.S1_atpmrna41885--5e+0At5g65850F-box family proteinO.I.H.G.S.X.
0.1525.30.82PtpAffx.29015.1.S1_atDN492106hypothetical protein-4e-1At2g39851identical protein binding / serine-type endopeptidaseO.I.H.G.S.X.
0.1016.30.85PtpAffx.224477.1.S1_x_atpmrna43049hypothetical protein-5e-9At1g22130AGL104 (AGAMOUS-LIKE 104)O.I.H.G.S.X.
0.1016.30.82PtpAffx.204483.1.S1_atpmrna8798--1e-4At2g27610pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.046.90.83PtpAffx.205758.1.S1_atpmrna11372hypothetical protein-2e+0At5g66220chalcone isomeraseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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