Co-expression analysis

Gene ID	PtpAffx.134623.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g39870: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.21
%ile	38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.88	PtpAffx.134623.1.A1_at	CV228876	-	-	2e+0	At5g39870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.7473.2.S1_at	CV237958	hypothetical protein	-	1e+0	At2g05803	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.140892.2.A1_a_at	CV241766	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.139528.2.A1_at	CV228130	-	-	4e-10	At3g08570	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.89	PtpAffx.202924.1.S1_at	pmrna5786	hypothetical protein	-	2e+0	At3g10880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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