Co-expression analysis

Gene ID	PtpAffx.134612.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g30820: unknown protein (HF=9e-12)
Module size	6 genes
NF	0.71
%ile	96.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.94	PtpAffx.134612.1.A1_at	CV229293	hypothetical protein	-	9e-12	At2g30820	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.94	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.5646.1.S1_s_at	CX169047	hypothetical protein	-	4e-7	At3g02640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.6	98.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.0	97.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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