Co-expression analysis

Gene ID	PtpAffx.134527.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g28110: SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) (HF=1e-6)
Module size	6 genes
NF	0.73
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.93	PtpAffx.134527.1.A1_at	CV232655	hypothetical protein	-	1e-6	At1g28110	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.93	PtpAffx.208263.1.S1_s_at	pmrna16443	hypothetical protein	-	5e-3	At1g67730	YBR159	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	PtpAffx.218769.1.S1_s_at	pmrna34496	hypothetical protein	-	1e-1	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	PtpAffx.208642.1.S1_at	pmrna17154	hypothetical protein	-	1e-1	At4g14660	NRPE7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.204886.1.S1_at	pmrna9652	white-brown-complex ABC transporter family	-	5e-46	At1g51500	CER5 (ECERIFERUM 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.122511.1.S1_at	CN518509	bile acid:Na+ symporter family protein	-	5e-12	At2g26900	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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