Co-expression analysis

Gene ID	PtpAffx.13452.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g63910: FCLY (FARNESYLCYSTEINE LYASE) (HF=2e-6)
Module size	6 genes
NF	0.58
%ile	88.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.96	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.32904.1.A1_at	CV258986	hypothetical protein	-	6e-6	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.6553.2.A1_at	CK093504	hypothetical protein	-	6e-1	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.3295.1.S1_at	BU813448	hypothetical protein	-	1e-3	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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