Co-expression analysis

Gene ID	PtpAffx.134238.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g47350: PAPA-1-like family protein / zinc finger (HIT type) family protein (HF=3e-3)
Module size	6 genes
NF	0.39
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.95	PtpAffx.134238.1.A1_at	CV242930	hypothetical protein	-	3e-3	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.210413.1.S1_s_at	pmrna20461	hypothetical protein	-	5e-11	At1g17970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.108294.1.A1_at	CV245961	ethylene-insensitive 3f	-	8e+0	At5g36722	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.1192.1.A1_at	CV276864	hypothetical protein	-	6e-10	At1g51350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.147327.1.A1_at	CV241826	hypothetical protein	-	4e-7	At2g32760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.84271.1.S1_at	CK092971	hypothetical protein	-	5e+0	At1g32760	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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