Co-expression analysis

Gene ID	PtpAffx.13421.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g15870: oxidoreductase (HF=2e+0)
Module size	6 genes
NF	0.22
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	64.6	0.82	PtpAffx.13421.1.S1_at	BU823258	-	-	2e+0	At3g15870	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.83	PtpAffx.216698.1.S1_at	pmrna31647	hypothetical protein	-	4e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.85	PtpAffx.211544.1.S1_at	pmrna22624	hypothetical protein	-	5e-1	At3g61390	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.82	PtpAffx.224742.1.S1_at	pmrna43560	hypothetical protein	-	2e+0	At3g21590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.82	PtpAffx.4692.2.A1_at	CV280219	-	-	4e-1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.82	PtpAffx.69483.1.A1_at	CV255661	-	-	3e-3	At5g10740	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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