CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.134057.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g05590: RPL18 (RIBOSOMAL PROTEIN L18) (HF=3e-33)

Module size 14 genes

NF 0.51

%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 97.5 0.95 PtpAffx.134057.1.A1_s_at CV265604 hypothetical protein - 3e-33 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) O.I. H.G. S.X.
0.64 88.4 0.97 PtpAffx.1398.1.S1_at CV233963 - - 3e-22 At3g56020 60S ribosomal protein L41 (RPL41G) O.I. H.G. S.X.
0.64 88.4 0.97 PtpAffx.18438.1.A1_s_at CV250284 - - 4e-21 At3g08520 60S ribosomal protein L41 (RPL41D) O.I. H.G. S.X.
0.56 83.9 0.97 Ptp.1364.1.S1_a_at CV248495 hypothetical protein - 7e-36 At4g29390 40S ribosomal protein S30 (RPS30B) O.I. H.G. S.X.
0.55 82.2 0.96 Ptp.4147.1.S1_s_at CV260818 - - 1e-44 At3g05560 60S ribosomal protein L22-2 (RPL22B) O.I. H.G. S.X.
0.55 82.2 0.96 PtpAffx.17310.1.S1_at CV251060 hypothetical protein - 2e-27 At1g09590 60S ribosomal protein L21 (RPL21A) O.I. H.G. S.X.
0.54 80.8 0.95 Ptp.2087.1.S1_s_at CV246741 hypothetical protein - 7e-46 At4g27090 60S ribosomal protein L14 (RPL14B) O.I. H.G. S.X.
0.53 80.5 0.97 Ptp.6762.1.S1_at CV275523 hypothetical protein - 2e-33 At5g18380 40S ribosomal protein S16 (RPS16C) O.I. H.G. S.X.
0.50 78.6 0.97 Ptp.2574.1.S1_at CV251969 hypothetical protein - 2e-55 At5g20290 40S ribosomal protein S8 (RPS8A) O.I. H.G. S.X.
0.42 68.6 0.97 PtpAffx.291.7.A1_s_at CV235503 - - 3e-1 At1g07930 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.41 67.7 0.96 PtpAffx.7508.1.S1_a_at CV248835 hypothetical protein - 6e-71 At5g62300 40S ribosomal protein S20 (RPS20C) O.I. H.G. S.X.
0.40 67.0 0.97 Ptp.2121.1.S1_x_at CV271027 hypothetical protein - 8e-142 At4g36130 60S ribosomal protein L8 (RPL8C) O.I. H.G. S.X.
0.36 61.6 0.97 Ptp.6766.1.S1_s_at BI132148 - - 4e-29 At5g28060 40S ribosomal protein S24 (RPS24B) O.I. H.G. S.X.
0.25 43.6 0.97 PtpAffx.17411.1.S1_at CV242125 hypothetical protein - 6e-45 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 95.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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