Co-expression analysis

Gene ID	PtpAffx.133965.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g03320: tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) (HF=2e-4)
Module size	21 genes
NF	0.28
%ile	50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	0.89	PtpAffx.133965.1.A1_at	CV254950	-	-	2e-4	At4g03320	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.137115.1.S1_s_at	DN502085	hypothetical protein	-	4e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.202303.1.S1_x_at	pmrna4606	hypothetical protein	-	3e-24	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.92	PtpAffx.104857.2.S1_a_at	BP924922	hypothetical protein	-	4e+0	At5g07190	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.209995.1.S1_at	pmrna19718	hypothetical protein	-	9e-84	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.94	PtpAffx.135763.1.S1_s_at	CK103803	hypothetical protein	-	1e-12	At2g40280	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.88	PtpAffx.79915.1.S1_s_at	CV233367	hypothetical protein	-	3e-6	At1g23870	ATTPS9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.210206.1.S1_x_at	pmrna20102	hypothetical protein	-	8e-119	At4g28000	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.206376.1.S1_at	pmrna12662	hypothetical protein	-	3e-62	At2g19400	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.37.1.S1_at	CA929635	hypothetical protein	-	9e-12	At4g17890	AGD8 (ARF-GAP DOMAIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.89	PtpAffx.162982.1.S1_s_at	CA926296	hypothetical protein	-	7e-53	At3g18060	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.11054.1.S1_at	CK097614	hypothetical protein	-	2e-6	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.51614.3.S1_at	CV237828	-	-	9e-1	At3g06870	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.104857.1.S1_at	CK106237	hypothetical protein	-	8e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.94	PtpAffx.101307.1.A1_at	CV261304	hypothetical protein	-	3e-8	At4g14950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.91	PtpAffx.159863.1.A1_at	CV257030	-	-	2e+0	At3g23650	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	Ptp.383.1.A1_at	CK088726	-	-	8e-14	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.39223.1.A1_at	CK101913	hypothetical protein	-	9e-34	At2g43040	NPG1 (no pollen germination 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.150652.1.S1_at	CK106078	hypothetical protein	-	6e-21	At4g36940	NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.91	PtpAffx.33074.1.S1_at	CK091989	hypothetical protein	-	6e-65	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.24581.1.A1_s_at	CV255180	hypothetical protein	-	4e-16	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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