Co-expression analysis

Gene ID	PtpAffx.133437.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g14600: 60S ribosomal protein L18A (RPL18aC) (HF=9e-36)
Module size	6 genes
NF	0.26
%ile	47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.95	PtpAffx.133437.1.A1_at	CV275893	hypothetical protein	-	9e-36	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.549.1.A1_s_at	CV247729	hypothetical protein	-	1e-31	At1g74050	60S ribosomal protein L6 (RPL6C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	Ptp.1417.1.S1_x_at	CV266482	hypothetical protein	-	2e-59	At5g10360	EMB3010 (embryo defective 3010)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.1417.1.S1_at	CV266482	hypothetical protein	-	2e-59	At5g10360	EMB3010 (embryo defective 3010)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	Ptp.1555.1.S1_a_at	CV263349	hypothetical protein	-	7e-31	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.96	PtpAffx.993.2.S1_s_at	BU835787	hypothetical protein	-	2e-101	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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