Co-expression analysis

Gene ID	PtpAffx.133398.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g17170: ENH1 (enhancer of sos3-1) (HF=8e-27)
Module size	9 genes
NF	0.39
%ile	66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	0.92	PtpAffx.133398.1.A1_at	CV278665	hypothetical protein	-	8e-27	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	PtpAffx.35988.4.A1_a_at	BU883315	-	-	1e-7	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	PtpAffx.138084.1.S1_s_at	CN519591	-	-	2e-28	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.35988.1.A1_at	CV261103	-	-	8e-9	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.107075.1.S1_at	BI072717	hypothetical protein	-	4e-50	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.41989.1.S1_s_at	DN490162	hypothetical protein	-	3e-4	At4g21210	ATRP1 (PPDK REGULATORY PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.83319.1.S1_s_at	CN523183	-	-	1e-81	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.5008.1.S1_at	CK104934	-	-	4e-26	At5g54290	cytochrome c biogenesis protein family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	PtpAffx.212770.1.S1_at	pmrna24990	hypothetical protein	-	7e-9	At1g27510	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.5	96.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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