Co-expression analysis

Gene ID	PtpAffx.132883.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g10430: - (HF=2e-1)
Module size	6 genes
NF	0.41
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.203551.1.S1_at	pmrna7052	chromatin remodeling complex subunit	-	4e-26	At3g54460	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.219775.1.S1_x_at	pmrna35842	hypothetical protein	-	5e-1	At5g03380	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.28701.2.S1_s_at	BU867887	hypothetical protein	-	1e-13	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.5862.1.A1_at	CV231890	chromatin remodeling complex subunit	-	1e+0	At2g31380	STH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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