Co-expression analysis

Gene ID PtpAffx.132626.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g31130: unknown protein (HF=1e-4)
Module size 7 genes
NF 0.28
%ile 50.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.93PtpAffx.132626.1.S1_s_atCX170249hypothetical protein-1e-4At2g31130unknown proteinO.I.H.G.S.X.
0.4673.70.94PtpAffx.3753.2.S1_atCX181474hypothetical protein-7e-24At2g40960nucleic acid bindingO.I.H.G.S.X.
0.4369.70.95PtpAffx.205002.1.S1_atpmrna9897hypothetical protein-1e-17At2g44280-O.I.H.G.S.X.
0.3052.00.94PtpAffx.147068.2.A1_atCV264395hypothetical protein-3e-8At3g25910zinc ion bindingO.I.H.G.S.X.
0.2238.30.94PtpAffx.1459.3.A1_a_atCV271826hypothetical protein-3e-16At4g22220ISU1O.I.H.G.S.X.
0.1932.70.94PtpAffx.69764.2.A1_atCV265274hypothetical protein-6e-6At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.1016.30.94Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.499.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.597.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage