Co-expression analysis

Gene ID PtpAffx.13217.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g53370: PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F) (HF=2e-6)
Module size 6 genes
NF 0.20
%ile 37.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.86PtpAffx.13217.1.S1_atCK320792--2e-6At5g53370PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)O.I.H.G.S.X.
0.4471.90.90Ptp.1958.1.S1_s_atCK087977hypothetical protein-7e-43At2g03350unknown proteinO.I.H.G.S.X.
0.3153.70.88PtpAffx.11906.1.A1_atCV247477--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.2034.60.88PtpAffx.204170.1.S1_s_atpmrna8216hypothetical protein-2e-9At1g13680phospholipase C/ phosphoric diester hydrolaseO.I.H.G.S.X.
0.1219.60.85PtpAffx.24419.1.A1_atCV260423hypothetical protein-2e-5At3g56130biotin/lipoyl attachment domain-containing proteinO.I.H.G.S.X.
0.1118.10.87PtpAffx.215970.1.S1_atpmrna30464hypothetical protein-8e-20At4g35420dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.092.9GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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