Co-expression analysis

Gene ID PtpAffx.130614.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g36195: serine carboxypeptidase S28 family protein (HF=2e-3)
Module size 6 genes
NF 0.35
%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.130614.1.S1_s_atCX655855hypothetical protein-2e-3At4g36195serine carboxypeptidase S28 family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.145998.1.S1_atCX178313hypothetical protein-7e-16At4g32600zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4774.60.95PtpAffx.221507.1.S1_s_atpmrna38425hypothetical protein-1e-98At1g17720ATB BETAO.I.H.G.S.X.
0.3357.50.95PtpAffx.113001.1.S1_atBU809359hypothetical protein-2e-39At4g13360catalyticO.I.H.G.S.X.
0.3255.20.95PtpAffx.219319.1.S1_s_atpmrna35202hypothetical protein-5e-51At3g16090zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1525.30.95PtpAffx.2489.2.S1_s_atCV131015hypothetical protein-3e-2At3g60340palmitoyl protein thioesterase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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