CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.12848.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g37410: ATTIM17-2 (HF=3e-11)

Module size 6 genes

NF 0.36

%ile 62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 PtpAffx.12848.1.S1_at DN484571 hypothetical protein - 3e-11 At2g37410 ATTIM17-2 O.I. H.G. S.X.
0.60 86.0 0.95 Ptp.4629.1.S1_s_at CV269449 hypothetical protein - 9e-15 At1g12360 KEU (keule) O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.4333.1.S1_s_at BU815840 hypothetical protein - 1e-16 At2g14835 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.24 41.8 0.95 Ptp.6163.2.S1_s_at CF234204 hypothetical protein - 9e-24 At3g53710 AGD6 O.I. H.G. S.X.
0.23 40.5 0.95 PtpAffx.157395.1.S1_s_at CK102655 hypothetical protein - 2e-12 At5g13860 ELC-Like (ELCH-like) O.I. H.G. S.X.
0.23 40.5 0.96 PtpAffx.39908.3.S1_a_at CX176310 hypothetical protein - 1e-71 At1g10430 PP2A-2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.96	PtpAffx.20059.2.S1_s_at	CA925998	hypothetical protein	-	2e-70	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.137956.1.S1_at	CK103575	hypothetical protein	-	1e-12	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.23	40.5	0.94	PtpAffx.48310.2.S1_s_at	CA821442	hypothetical protein	-	9e-11	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.
0.21	36.5	0.94	PtpAffx.128558.1.S1_at	AJ771692	sulfate/bicarbonate/oxalate exchanger and transporter sat-1 /// sulfate/bicarbonate/oxalate exchanger and transporter sat-1	-	2e-20	At5g13550	SULTR4	O.I.	H.G.	S.X.
0.21	36.5	0.95	PtpAffx.4465.2.S1_at	CA929665	hypothetical protein	-	3e-126	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.
0.20	34.6	0.94	PtpAffx.8857.3.S1_at	BP928835	hypothetical protein	-	3e-1	At5g40660	ATP12 protein-related	O.I.	H.G.	S.X.
0.19	32.7	0.91	PtpAffx.67030.1.S1_at	BI128170	hypothetical protein	-	2e-12	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	O.I.	H.G.	S.X.
0.18	30.8	0.93	PtpAffx.132468.2.S1_at	CX186636	-	-	1e+0	At3g44704	unknown protein	O.I.	H.G.	S.X.
0.18	30.8	0.95	Ptp.5210.1.S1_at	BP934249	hypothetical protein	-	2e-4	At2g01470	STL2P (SEC12P-LIKE 2 PROTEIN)	O.I.	H.G.	S.X.
0.17	29.1	0.96	PtpAffx.221137.1.S1_at	pmrna37769	hypothetical protein	-	6e-109	At1g47550	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 93.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9 87.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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