Co-expression analysis

Gene ID	PtpAffx.12848.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g37410: ATTIM17-2 (HF=3e-11)
Module size	6 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.4629.1.S1_s_at	CV269449	hypothetical protein	-	9e-15	At1g12360	KEU (keule)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4333.1.S1_s_at	BU815840	hypothetical protein	-	1e-16	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	Ptp.6163.2.S1_s_at	CF234204	hypothetical protein	-	9e-24	At3g53710	AGD6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.157395.1.S1_s_at	CK102655	hypothetical protein	-	2e-12	At5g13860	ELC-Like (ELCH-like)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6865.1.S1_at, orthologous to the query gene, PtpAffx.12848.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	Ta.6865.1.S1_at	At2g37410	-	-	4e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.3036.2.S1_a_at	At2g37410	-	-	4e+0	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.7948.1.S1_at	At2g37410	-	-	8e+0	At3g58630	transcription factor	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.3604.1.S1_at	At2g37410	-	-	4e-1	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.4266.1.S1_at	At2g37410	-	-	1e-32	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.21119.1.S1_a_at	At2g37410	-	-	3e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.1770.1.S1_a_at	At2g37410	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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