Co-expression analysis

Gene ID	PtpAffx.12848.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g37410: ATTIM17-2 (HF=3e-11)
Module size	6 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.4629.1.S1_s_at	CV269449	hypothetical protein	-	9e-15	At1g12360	KEU (keule)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4333.1.S1_s_at	BU815840	hypothetical protein	-	1e-16	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	Ptp.6163.2.S1_s_at	CF234204	hypothetical protein	-	9e-24	At3g53710	AGD6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.157395.1.S1_s_at	CK102655	hypothetical protein	-	2e-12	At5g13860	ELC-Like (ELCH-like)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, Contig10300_at, orthologous to the query gene, PtpAffx.12848.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig10300_at	At2g37410	-	-	4e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	HV_CEa0014J08r2_at	At2g37410	-	-	4e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig2999_at	At2g37410	-	-	6e-7	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig13036_at	At2g37410	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig11845_at	At2g37410	-	-	2e+0	At2g35850	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig9797_at	At2g37410	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig13468_at	At2g37410	-	-	2e+0	At2g33850	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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