Co-expression analysis

Gene ID	PtpAffx.12848.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g37410: ATTIM17-2 (HF=3e-11)
Module size	6 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.4629.1.S1_s_at	CV269449	hypothetical protein	-	9e-15	At1g12360	KEU (keule)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4333.1.S1_s_at	BU815840	hypothetical protein	-	1e-16	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	Ptp.6163.2.S1_s_at	CF234204	hypothetical protein	-	9e-24	At3g53710	AGD6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.157395.1.S1_s_at	CK102655	hypothetical protein	-	2e-12	At5g13860	ELC-Like (ELCH-like)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.9037.1.S1_at, orthologous to the query gene, PtpAffx.12848.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	93.4	GmaAffx.9037.1.S1_at	At2g37410	-	-	5e-1	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.6669.1.S1_at	At2g37410	-	-	2e-13	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.9722.1.S1_at	At2g37410	-	-	5e-4	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.2146.1.S1_at	At2g37410	-	-	1e-39	At1g50430	DWF5 (DWARF 5)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.4125.1.S1_at	At2g37410	-	-	5e-1	At3g52520	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.6439.1.S1_at	At2g37410	-	-	7e-34	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.8114.1.S1_at	At2g37410	-	-	4e-45	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.16923.1.A1_s_at	At2g37410	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.72806.1.S1_at	At2g37410	-	-	2e+0	At5g47360	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.2150.1.S1_at	At2g37410	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.10966.1.S1_at	At2g37410	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.11747.2.S1_s_at	At2g37410	-	-	3e-5	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.51287.1.S1_at	At2g37410	-	-	2e-47	At5g44320	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.17906.1.S1_s_at	At2g37410	-	-	2e-11	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.4379.3.A1_x_at	At2g37410	-	-	8e-14	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.4356.1.S1_a_at	At2g37410	-	-	2e-99	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.15307.1.S1_at	At2g37410	-	-	9e-44	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.7693.2.S1_x_at	At2g37410	-	-	6e-109	At5g06360	ribosomal protein S8e family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.2127.1.S1_at	At2g37410	-	-	3e-33	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6228.1.S1_at	At2g37410	-	-	3e-123	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.16382.1.S1_at	At2g37410	-	-	2e-61	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.3929.1.A1_at	At2g37410	-	-	4e-10	At5g18400	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.92392.1.S1_at	At2g37410	-	-	4e-1	At2g18970	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.4379.1.S1_a_at	At2g37410	-	-	1e-23	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.2917.1.S1_at	At2g37410	-	-	4e-7	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.1793.1.S1_x_at	At2g37410	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.75093.1.A1_s_at	At2g37410	-	-	1e+1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.3125.1.S1_at	At2g37410	-	-	8e-16	At5g57440	GS1	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.18098.1.S1_at	At2g37410	-	-	3e-6	At5g35430	binding	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.11021.1.S1_at	At2g37410	-	-	3e-33	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.8354.1.S1_s_at	At2g37410	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.63297.1.S1_s_at	At2g37410	-	-	4e-3	At4g27680	MSP1 protein, putative / intramitochondrial sorting protein, putative	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.65660.1.S1_at	At2g37410	-	-	9e-64	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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