Co-expression analysis

Gene ID	PtpAffx.127785.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g35070: - (HF=6e+0)
Module size	9 genes
NF	0.71
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.127785.1.S1_at	CV244219	hypothetical protein	-	6e+0	At4g35070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.89	97.8	0.91	Ptp.3188.1.S1_s_at	CV272339	hypothetical protein	-	3e-2	At5g22360	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.93	PtpAffx.2274.1.S1_at	CV262526	hypothetical protein	-	6e+0	At5g09530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.94	PtpAffx.101338.1.A1_at	CV268770	hypothetical protein	-	1e-28	At3g11430	GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.91	PtpAffx.59172.1.S1_s_at	BU885589	hypothetical protein	-	1e+0	At5g46150	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.94	PtpAffx.217339.1.S1_s_at	pmrna32557	hypothetical protein	-	1e-1	At3g50400	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.207305.1.S1_at	pmrna14487	hypothetical protein	-	7e-31	At2g23540	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	PtpAffx.5070.1.A1_at	CV273039	-	-	6e-4	At2g18360	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	PtpAffx.30807.1.A1_at	CV260510	hypothetical protein	-	3e-1	At2g33855	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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