Co-expression analysis

Gene ID	PtpAffx.12741.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g08230: glycine-rich protein (HF=8e-2)
Module size	6 genes
NF	0.43
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.97	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.100467.1.S1_at	CX657915	hypothetical protein	-	8e-40	At4g16144	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	Ptp.1847.1.A1_s_at	CK093485	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.48244.1.A1_at	DN491049	hypothetical protein	-	9e-5	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	Ptp.1338.1.A1_at	CV245431	-	-	2e-55	At5g03730	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.97	PtpAffx.6505.1.A1_s_at	CV238517	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.0	99.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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