CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.127059.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g66270: BGLU21 (HF=1e-4)

Module size 6 genes

NF 0.76

%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 O.I. H.G. S.X.
0.80 96.0 0.93 PtpAffx.209537.1.S1_at pmrna18896 hypothetical protein - 1e+0 At3g59250 F-box family protein O.I. H.G. S.X.
0.80 96.0 0.95 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) O.I. H.G. S.X.
0.73 93.6 0.92 PtpAffx.162331.1.S1_at CA821362 - - 1e+0 At4g11640 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g66270, orthologous to the query gene, PtpAffx.127059.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA O.I. H.G. S.X.
0.70 83.5 At1g54000 841838 myrosinase-associated protein, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFM O.I. H.G. S.X.
0.67 81.6 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. O.I. H.G. S.X.
0.61 76.7 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. O.I. H.G. S.X.
0.60 75.7 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. O.I. H.G. S.X.
0.58 73.8 At3g16460 820894 jacalin lectin family protein F:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVA O.I. H.G. S.X.
0.56 73.0 At5g26280 832697 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM O.I. H.G. S.X.
0.52 67.4 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF O.I. H.G. S.X.
0.48 62.5 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. O.I. H.G. S.X.
0.40 50.8 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.27 26.2 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. H.G. S.X.
0.17 10.2 At1g50560 841477 CYP705A25 member of CYP705A O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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