Co-expression analysis

Gene ID	PtpAffx.126959.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g36925: unknown protein (HF=4e+0)
Module size	8 genes
NF	0.40
%ile	67.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.88	PtpAffx.126959.1.A1_at	CV277847	hypothetical protein	-	4e+0	At4g36925	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.86	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.86	Ptp.1105.2.A1_s_at	BP936421	hypothetical protein	-	7e-1	At4g32030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.86	Ptp.1215.1.A1_at	CK090318	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e+0	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.86	PtpAffx.221180.1.S1_at	pmrna37857	hypothetical protein	-	2e-66	At5g09890	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.56585.1.S1_at	CV259403	hypothetical protein	-	9e-1	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.88	PtpAffx.147103.1.A1_at	CV251110	thioredoxin h	-	2e+0	At2g41160	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.88	PtpAffx.216835.1.S1_at	pmrna31873	hypothetical protein	-	3e-9	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage