Co-expression analysis

Gene ID PtpAffx.126851.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g06890: - (HF=6e+0)
Module size 7 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.84PtpAffx.126851.1.A1_atCV283322hypothetical protein-6e+0At5g06890-O.I.H.G.S.X.
0.4067.00.84PtpAffx.132173.1.A1_atDN487132--7e-3At3g07920translation initiation factorO.I.H.G.S.X.
0.1729.10.88PtpAffx.200282.1.S1_atpmrna560hypothetical protein-6e-1At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.1016.30.86PtpAffx.205140.1.S1_atpmrna10177hypothetical protein-5e-1At2g40440BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.046.90.84PtpAffx.108515.1.A1_atCV237662--3e+0At5g19240unknown proteinO.I.H.G.S.X.
0.035.20.83Ptp.3185.1.S1_atAF480620.1phenylalanine amonnia lyase-2e-33At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.023.60.83PtpAffx.220848.1.S1_x_atpmrna37298hypothetical protein-2e+0At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1661.1.A1_at, orthologous to the query gene, PtpAffx.126851.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3945.6Zm.1661.1.A1_atAt5g0689050S ribosomal protein L27-5e-1At1g15840unknown proteinO.I.H.G.S.X.
0.1912.8Zm.853.1.A1_atAt5g06890hypothetical protein LOC100276013-2e-12At4g01150unknown proteinO.I.H.G.S.X.
0.1710.6Zm.7953.1.A1_atAt5g06890acid phosphatase/vanadium-dependent haloperoxidase related-7e+0At3g21610-O.I.H.G.S.X.
0.136.8Zm.10382.1.S1_atAt5g06890--5e-12At4g29660EMB2752 (EMBRYO DEFECTIVE 2752)O.I.H.G.S.X.
0.115.3Zm.4675.1.S1_atAt5g06890flavoprotein wrbA-4e-1At4g36750quinone reductase family proteinO.I.H.G.S.X.
0.072.9Zm.3569.1.A1_atAt5g06890hypothetical protein LOC100280101-5e+0At3g55600-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage