Co-expression analysis

Gene ID PtpAffx.126851.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g06890: - (HF=6e+0)
Module size 7 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.84PtpAffx.126851.1.A1_atCV283322hypothetical protein-6e+0At5g06890-O.I.H.G.S.X.
0.4067.00.84PtpAffx.132173.1.A1_atDN487132--7e-3At3g07920translation initiation factorO.I.H.G.S.X.
0.1729.10.88PtpAffx.200282.1.S1_atpmrna560hypothetical protein-6e-1At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.1016.30.86PtpAffx.205140.1.S1_atpmrna10177hypothetical protein-5e-1At2g40440BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.046.90.84PtpAffx.108515.1.A1_atCV237662--3e+0At5g19240unknown proteinO.I.H.G.S.X.
0.035.20.83Ptp.3185.1.S1_atAF480620.1phenylalanine amonnia lyase-2e-33At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.023.60.83PtpAffx.220848.1.S1_x_atpmrna37298hypothetical protein-2e+0At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.10518.2.S1_at, orthologous to the query gene, PtpAffx.126851.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5779.2Ta.10518.2.S1_atAt5g06890--3e-1At1g43190polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeO.I.H.G.S.X.
0.3040.9Ta.986.1.S1_atAt5g06890--3e+0At2g27160unknown proteinO.I.H.G.S.X.
0.2939.2Ta.482.1.A1_a_atAt5g06890--5e-2At1g16640transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2227.1Ta.482.2.A1_x_atAt5g06890--3e+0At5g22791-O.I.H.G.S.X.
0.1517.1Ta.986.3.S1_atAt5g06890--6e-1At1g71000heat shock protein bindingO.I.H.G.S.X.
0.1517.1Ta.6694.3.S1_a_atAt5g06890--1e+0At3g27640transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1415.8Ta.11278.1.S1_atAt5g06890--6e+0At5g67411-O.I.H.G.S.X.
0.1213.3Ta.10518.1.A1_atAt5g06890--3e-1At1g13990unknown proteinO.I.H.G.S.X.
0.0910.4Ta.25848.1.A1_atAt5g06890--5e+0At5g50190-O.I.H.G.S.X.
0.0910.4Ta.12011.1.S1_atAt5g06890--6e+0At3g46070zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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