Co-expression analysis

Gene ID	PtpAffx.126851.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g06890: - (HF=6e+0)
Module size	7 genes
NF	0.05
%ile	10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.84	PtpAffx.126851.1.A1_at	CV283322	hypothetical protein	-	6e+0	At5g06890	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.84	PtpAffx.132173.1.A1_at	DN487132	-	-	7e-3	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.88	PtpAffx.200282.1.S1_at	pmrna560	hypothetical protein	-	6e-1	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.86	PtpAffx.205140.1.S1_at	pmrna10177	hypothetical protein	-	5e-1	At2g40440	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.84	PtpAffx.108515.1.A1_at	CV237662	-	-	3e+0	At5g19240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.83	Ptp.3185.1.S1_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.83	PtpAffx.220848.1.S1_x_at	pmrna37298	hypothetical protein	-	2e+0	At5g04120	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the rice gene, OsAffx.30149.1.S1_s_at, orthologous to the query gene, PtpAffx.126851.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Triticum_aestivum

Vitis_vinifera

Zea_mays

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