Co-expression analysis

Gene ID PtpAffx.126851.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g06890: - (HF=6e+0)
Module size 7 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.84PtpAffx.126851.1.A1_atCV283322hypothetical protein-6e+0At5g06890-O.I.H.G.S.X.
0.4067.00.84PtpAffx.132173.1.A1_atDN487132--7e-3At3g07920translation initiation factorO.I.H.G.S.X.
0.1729.10.88PtpAffx.200282.1.S1_atpmrna560hypothetical protein-6e-1At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.1016.30.86PtpAffx.205140.1.S1_atpmrna10177hypothetical protein-5e-1At2g40440BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.046.90.84PtpAffx.108515.1.A1_atCV237662--3e+0At5g19240unknown proteinO.I.H.G.S.X.
0.035.20.83Ptp.3185.1.S1_atAF480620.1phenylalanine amonnia lyase-2e-33At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.023.60.83PtpAffx.220848.1.S1_x_atpmrna37298hypothetical protein-2e+0At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig8437_at, orthologous to the query gene, PtpAffx.126851.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9498.9Contig8437_atAt5g06890--1e-1At5g40950RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)O.I.H.G.S.X.
0.5066.9Contig10347_atAt5g06890--7e-20At4g04920SFR6 (SENSITIVE TO FREEZING 6)O.I.H.G.S.X.
0.4863.2Contig9277_s_atAt5g06890--2e-1At2g28840ankyrin repeat family proteinO.I.H.G.S.X.
0.4661.0EBro07_SQ002_G23_s_atAt5g06890--4e-2At3g10915reticulon family proteinO.I.H.G.S.X.
0.4661.0Contig15361_atAt5g06890--2e-2At1g75600histone H3.2, putativeO.I.H.G.S.X.
0.4153.9Contig16174_atAt5g06890--5e+0At3g56490zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.3747.9Contig13159_atAt5g06890--2e-16At3g01780TPLATEO.I.H.G.S.X.
0.3747.9HVSMEa0014L12r2_atAt5g06890--1e+1At5g36920unknown proteinO.I.H.G.S.X.
0.3647.1Contig4444_atAt5g06890--3e-3At2g40960nucleic acid bindingO.I.H.G.S.X.
0.3545.1Contig1086_atAt5g06890--2e-67At2g35635UBQ7O.I.H.G.S.X.
0.3545.1Contig10093_atAt5g06890--2e-3At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.3443.6Contig6966_atAt5g06890--5e-29At1g09330unknown proteinO.I.H.G.S.X.
0.3342.6Contig10237_atAt5g06890--5e+0At5g44568unknown proteinO.I.H.G.S.X.
0.3240.3Contig5916_atAt5g06890--2e-6At3g60340palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.3037.0Contig8064_atAt5g06890--1e-1At4g17670senescence-associated protein-relatedO.I.H.G.S.X.
0.3037.0Contig10093_s_atAt5g06890--2e-3At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.3037.0Contig976_atAt5g06890--2e-26At3g52930fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3037.0Contig4217_atAt5g06890--3e-71At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.2935.5Contig9811_atAt5g06890--6e-8At4g31410unknown proteinO.I.H.G.S.X.
0.2835.5Contig6506_s_atAt5g06890--6e-23At5g27740EMB2775 (EMBRYO DEFECTIVE 2775)O.I.H.G.S.X.
0.2835.5Contig9955_atAt5g06890--3e-1At2g23310ATRER1C1O.I.H.G.S.X.
0.2835.5Contig5527_atAt5g06890--2e-4At3g16910AAE7 (ACYL-ACTIVATING ENZYME 7)O.I.H.G.S.X.
0.2835.5Contig5574_atAt5g06890--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.2835.5Contig6938_atAt5g06890--1e+0At1g45145ATTRX5O.I.H.G.S.X.
0.2122.6Contig11554_atAt5g06890--5e-7At1g22700tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.1818.2Contig12345_atAt5g06890--2e-29At4g17300NS1O.I.H.G.S.X.
0.1716.9Contig11176_atAt5g06890--3e-6At2g25670unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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