Co-expression analysis

Gene ID PtpAffx.1257.1.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g16180: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=3e-65)
Module size 6 genes
NF 0.30
%ile 53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.95PtpAffx.1257.1.S1_a_atCF228330hypothetical protein-3e-65At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.37010.2.A1_atCV281749hypothetical protein-5e-34At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)O.I.H.G.S.X.
0.2747.10.96PtpAffx.249.859.A1_atCV276451--4e-43At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.2340.50.96PtpAffx.223266.1.S1_atpmrna41180hypothetical protein-1e-95At1g10240FRS11 (FAR1-related sequence 11)O.I.H.G.S.X.
0.2238.30.95PtpAffx.12253.1.A1_atCV225881hypothetical protein-3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.1932.70.95Ptp.8000.1.S1_atDN484105hypothetical protein-0Atmg01190-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
5.396.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.696.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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