Co-expression analysis

Gene ID	PtpAffx.12552.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g05840: unknown protein (HF=3e-17)
Module size	6 genes
NF	0.55
%ile	85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.12552.1.A1_at	CV253308	hypothetical protein	-	3e-17	At5g05840	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.157822.1.S1_at	BU872417	hypothetical protein	-	6e-3	At1g75160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.30574.1.A1_at	CV269706	hypothetical protein	-	9e-2	At1g14870	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.139063.1.S1_at	BP926381	hypothetical protein	-	2e+0	At3g28420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	PtpAffx.219849.1.S1_x_at	pmrna35998	hypothetical protein	-	1e-7	At1g61420	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	Ptp.6011.1.S1_at	CV131330	hypothetical protein	-	6e-3	At3g13610	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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