Co-expression analysis

Gene ID PtpAffx.125413.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g61210: embryo-abundant protein-related (HF=2e-1)
Module size 8 genes
NF 0.10
%ile 20.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.87PtpAffx.125413.1.S1_atBU829918--2e-1At3g61210embryo-abundant protein-relatedO.I.H.G.S.X.
0.2136.50.86Ptp.373.1.A1_atCK088690hypothetical protein-4e-1At2g28470BGAL8 (beta-galactosidase 8)O.I.H.G.S.X.
0.1932.70.87PtpAffx.209471.1.S1_atpmrna18781hypothetical protein-2e-1At5g67590FRO1 (FROSTBITE1)O.I.H.G.S.X.
0.0914.60.89PtpAffx.218247.1.S1_s_atpmrna33799hypothetical protein-2e+0At3g43682unknown proteinO.I.H.G.S.X.
0.0812.90.88PtpAffx.98474.1.S1_atDN497266--8e-2At5g56400F-box family proteinO.I.H.G.S.X.
0.0711.60.86PtpAffx.221007.1.S1_atpmrna37532hypothetical protein-2e+0At4g28270zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.058.30.88PtpAffx.28224.4.A1_atCV253046--4e-1At1g07745RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)O.I.H.G.S.X.
0.058.30.87PtpAffx.7473.2.S1_atCV237958hypothetical protein-1e+0At2g05803unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.495.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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