Co-expression analysis

Gene ID PtpAffx.125021.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g40270: protein kinase family protein (HF=4e-20)
Module size 7 genes
NF 0.48
%ile 78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.90PtpAffx.125021.1.S1_atCK103071hypothetical protein-4e-20At2g40270protein kinase family proteinO.I.H.G.S.X.
0.5582.20.95Ptp.1329.1.S1_s_atCK093720--2e-78At1g64650-O.I.H.G.S.X.
0.4673.70.91PtpAffx.212189.1.S1_s_atpmrna23892hypothetical protein-2e-5At5g07070CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)O.I.H.G.S.X.
0.4673.70.94Ptp.2457.1.S1_s_atCV264623s-adenosylmethionine synthetase 2-2e-165At3g17390MTO3 (METHIONINE OVER-ACCUMULATOR 3)O.I.H.G.S.X.
0.4067.00.94Ptp.4715.2.S1_s_atCV228991hypothetical protein-2e-9At4g30160VLN4 (ARABIDOPSIS THALIANA VILLIN 4)O.I.H.G.S.X.
0.3357.50.92PtpAffx.204785.1.S1_atpmrna9432hypothetical protein-8e-1At5g07150leucine-rich repeat family proteinO.I.H.G.S.X.
0.2747.10.95Ptp.1683.1.S1_a_atCV256655precursor of transferase serine hydroxymethyltransferase 3-1e-41At5g26780SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.193.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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