Co-expression analysis

Gene ID	PtpAffx.125021.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g40270: protein kinase family protein (HF=4e-20)
Module size	7 genes
NF	0.48
%ile	78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.125021.1.S1_at	CK103071	hypothetical protein	-	4e-20	At2g40270	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	Ptp.1329.1.S1_s_at	CK093720	-	-	2e-78	At1g64650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.91	PtpAffx.212189.1.S1_s_at	pmrna23892	hypothetical protein	-	2e-5	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	Ptp.2457.1.S1_s_at	CV264623	s-adenosylmethionine synthetase 2	-	2e-165	At3g17390	MTO3 (METHIONINE OVER-ACCUMULATOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.204785.1.S1_at	pmrna9432	hypothetical protein	-	8e-1	At5g07150	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	Ptp.1683.1.S1_a_at	CV256655	precursor of transferase serine hydroxymethyltransferase 3	-	1e-41	At5g26780	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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