Co-expression analysis

Gene ID PtpAffx.124498.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g55890: pentatricopeptide (PPR) repeat-containing protein (HF=2e-5)
Module size 18 genes
NF 0.36
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6891.30.91PtpAffx.124498.1.S1_atDN499848--2e-5At1g55890pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5683.90.96PtpAffx.213992.1.S1_atpmrna27260hypothetical protein-1e-23At5g15550transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5683.90.94PtpAffx.156493.1.S1_s_atCN519416hypothetical protein-1e-3At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.5683.90.96PtpAffx.143974.1.S1_s_atBU832117hypothetical protein-3e-8At5g15550transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5279.40.94PtpAffx.104250.1.S1_atCF231050hypothetical protein-2e-40At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.5178.90.94PtpAffx.159874.1.A1_s_atCV256704hypothetical protein-3e-48At3g07770ATP bindingO.I.H.G.S.X.
0.4167.70.96PtpAffx.152014.1.S1_atCF235813--6e-3At1g18850unknown proteinO.I.H.G.S.X.
0.4167.70.96PtpAffx.80837.1.S1_atBU820308hypothetical protein-2e+0At5g65480unknown proteinO.I.H.G.S.X.
0.4167.70.96PtpAffx.144362.1.S1_atBU813785hypothetical protein-4e+0At1g50060pathogenesis-related protein, putativeO.I.H.G.S.X.
0.3964.60.95PtpAffx.137461.1.S1_atCX171679hypothetical protein-5e-22At5g27120SAR DNA-binding protein, putativeO.I.H.G.S.X.
0.3762.30.96PtpAffx.128912.2.S1_s_atBP929641--1e-16At1g57720elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.3052.00.94PtpAffx.675.10.S1_s_atCX175725hypothetical protein-3e-35At2g47110UBQ6O.I.H.G.S.X.
0.2850.50.95PtpAffx.211121.1.S1_atpmrna21846hypothetical protein-8e-17At1g75660XRN3O.I.H.G.S.X.
0.2543.60.96PtpAffx.125423.1.S1_atDN488411hypothetical protein-1e-75At1g09270IMPA-4 (IMPORTIN ALPHA ISOFORM 4)O.I.H.G.S.X.
0.2441.80.96PtpAffx.124616.1.S1_s_atCK099809hypothetical protein-4e-134At3g02530chaperonin, putativeO.I.H.G.S.X.
0.2238.30.94Ptp.2566.1.S1_atCV257211hypothetical protein-9e-16At1g18080ATARCAO.I.H.G.S.X.
0.2136.50.95PtpAffx.96155.2.S1_a_atBP928977--1e+0At1g70420unknown proteinO.I.H.G.S.X.
0.2034.60.95PtpAffx.55360.1.S1_atCA823489hypothetical protein-3e-5At5g19320RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.583.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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