Co-expression analysis

Gene ID	PtpAffx.124431.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g35510: unknown protein (HF=2e+0)
Module size	11 genes
NF	0.63
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.87	PtpAffx.124431.1.A1_at	CV264645	-	-	2e+0	At5g35510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.89	PtpAffx.216790.1.S1_s_at	pmrna31796	hypothetical protein	-	9e-1	At5g47470	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.76	94.3	0.89	Ptp.7099.1.S1_s_at	BU810141	hypothetical protein	-	4e+0	At5g40430	MYB22 (myb domain protein 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.89	PtpAffx.77880.2.A1_s_at	CV264314	hypothetical protein	-	7e+0	At5g46874	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.62	87.2	0.91	PtpAffx.64701.1.S1_x_at	CV236236	histone 2	-	3e-45	At2g38810	HTA8 (HISTONE H2A 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.221038.1.S1_at	pmrna37583	hypothetical protein	-	3e-3	At3g60670	zinc-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.91	Ptp.6672.1.S1_s_at	CV247223	histone 2 /// histone 2	-	2e-62	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.89	PtpAffx.64701.2.S1_at	CX184746	histone 2	-	6e-12	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.202524.1.S1_s_at	pmrna5051	hypothetical protein	-	6e-1	At1g13700	glucosamine/galactosamine-6-phosphate isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.89	PtpAffx.16047.1.S1_at	DN491783	-	-	4e+0	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.90	PtpAffx.87978.1.S1_s_at	CX170242	leucine-rich repeat protein kinase	-	1e-38	At5g62230	ERL1 (ERECTA-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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