Co-expression analysis

Gene ID PtpAffx.12443.4.A1_s_at
Gene name cytochrome P450 cinnamate 4-hydroxylase
Homology with ArabidopsisSimilar to At2g30490: C4H (CINNAMATE-4-HYDROXYLASE) (HF=7e-24)
Module size 6 genes
NF 0.64
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.12443.4.A1_s_atCV240107cytochrome P450 cinnamate 4-hydroxylase-7e-24At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.7794.90.93PtpAffx.108986.1.S1_atAJ777271hypothetical protein-3e-38At5g54800GPT1O.I.H.G.S.X.
0.6086.00.95Ptp.791.1.S1_s_atCK087231cinnamyl alcohol dehydrogenase-6e-26At3g19450ATCAD4O.I.H.G.S.X.
0.5078.60.94Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.4774.60.95Ptp.2573.1.S1_atCV237401hypothetical protein-1e-95At5g37600ATGSR1O.I.H.G.S.X.
0.3863.70.95Ptp.2054.1.S1_s_atAF217958.1cinnamoyl CoA reductase-3e-18At1g15950CCR1 (CINNAMOYL COA REDUCTASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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