Co-expression analysis

Gene ID	PtpAffx.124389.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g43710: emb1075 (embryo defective 1075) (HF=7e-68)
Module size	6 genes
NF	0.32
%ile	56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.96	PtpAffx.124389.1.S1_at	BU809679	hypothetical protein	-	7e-68	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.6522.1.S1_at	BU834949	hypothetical protein	-	5e-22	At3g46450	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.202375.1.S1_at	pmrna4770	hypothetical protein	-	2e-30	At4g02030	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.152437.4.S1_s_at	BU824470	hypothetical protein	-	4e-44	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.74657.1.S1_s_at	CN520971	hypothetical protein	-	3e-45	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.211143.1.S1_s_at	pmrna21896	hypothetical protein	-	1e-13	At5g35980	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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