Co-expression analysis

Gene ID PtpAffx.124319.1.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g24810: ABC1 family protein (HF=2e-19)
Module size 9 genes
NF 0.31
%ile 55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.94PtpAffx.124319.1.S1_a_atCV256648hypothetical protein-2e-19At5g24810ABC1 family proteinO.I.H.G.S.X.
0.4471.90.94PtpAffx.215338.1.S1_s_atpmrna29464hypothetical protein-8e-15At2g45320unknown proteinO.I.H.G.S.X.
0.4268.60.93PtpAffx.203143.1.S1_atpmrna6228hypothetical protein-1e-56At1g17760CSTF77O.I.H.G.S.X.
0.3153.70.96PtpAffx.89237.1.A1_atCV232343hypothetical protein-3e-11At1g21710OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)O.I.H.G.S.X.
0.3052.00.94PtpAffx.200725.1.S1_s_atpmrna1394hypothetical protein-4e-20At1g50510indigoidine synthase A family proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.35473.1.S1_a_atCV244186hypothetical protein-3e-1At3g23280zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinO.I.H.G.S.X.
0.2645.20.94PtpAffx.104237.1.A1_atCV254710--4e-8At1g72990BGAL17 (beta-galactosidase 17)O.I.H.G.S.X.
0.2136.50.94PtpAffx.208361.1.S1_atpmrna16628hypothetical protein-9e-28At3g06170TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.1525.30.95PtpAffx.6289.1.A1_a_atCV267715--1e-4At1g74440unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.393.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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