Co-expression analysis

Gene ID PtpAffx.123412.1.S1_s_at
Gene name acyl:coa ligase acetate-coa synthetase-like protein
Homology with ArabidopsisSimilar to At5g16370: AAE5 (ACYL ACTIVATING ENZYME 5) (HF=1e-4)
Module size 7 genes
NF 0.77
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.91PtpAffx.123412.1.S1_s_atCN517487acyl:coa ligase acetate-coa synthetase-like protein-1e-4At5g16370AAE5 (ACYL ACTIVATING ENZYME 5)O.I.H.G.S.X.
0.8697.40.92PtpAffx.103190.1.S1_atCN524584cytochrome P450-2e+0At3g48040ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)O.I.H.G.S.X.
0.8397.00.93Ptp.6831.1.S1_s_atCN519077hypothetical protein-2e+0At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.8397.00.94PtpAffx.308.5.S1_s_atCN523454cytochrome P450-6e+0At2g28270DC1 domain-containing proteinO.I.H.G.S.X.
0.6388.10.90PtpAffx.6696.2.S1_s_atBU866133hypothetical protein-4e+0At5g17540transferase family proteinO.I.H.G.S.X.
0.6388.10.91Ptp.6598.1.S1_s_atCN523342cytochrome P450 /// cytochrome P450-2e+0At3g19350MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)O.I.H.G.S.X.
0.6187.00.93Ptp.4381.2.A1_a_atCV268269cytochrome P450-1e-4At3g48320CYP71A21O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
7.498.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.997.4GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.095.3GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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