Co-expression analysis

Gene ID	PtpAffx.12253.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g32960: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.51
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	PtpAffx.25116.1.A1_at	CV228813	hypothetical protein	-	2e-8	At3g54130	josephin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.67146.1.S1_s_at	BI120910	hypothetical protein	-	1e-30	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.663.1.S1_x_at	AY302065.1	hypothetical protein	-	1e-90	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6	96.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6	84.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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