Co-expression analysis

Gene ID	PtpAffx.12184.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g17609: HYH (HY5-HOMOLOG) (HF=1e-14)
Module size	6 genes
NF	0.42
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.89	PtpAffx.12184.1.S1_a_at	CN524707	hypothetical protein	-	1e-14	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.89	PtpAffx.6696.4.S1_at	CV283797	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein	-	4e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.37920.2.A1_at	CV284037	thioredoxin m	-	3e-2	At3g56420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.225140.1.S1_s_at	pmrna44273	ammonium transporter /// ammonium transporter	-	5e-5	At2g38290	ATAMT2 (AMMONIUM TRANSPORTER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.208409.1.S1_at	pmrna16713	hypothetical protein	-	9e-4	At1g69870	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.89	Ptp.6221.2.A1_at	CV259945	hypothetical protein	-	1e-25	At5g03880	electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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