Co-expression analysis

Gene ID	PtpAffx.121786.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g21800: QQT2 (quatre-quart2) (HF=3e-1)
Module size	14 genes
NF	0.10
%ile	19.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.84	PtpAffx.121786.1.A1_at	CV226461	-	-	3e-1	At4g21800	QQT2 (quatre-quart2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.87	PtpAffx.220788.1.S1_x_at	pmrna37221	hypothetical protein	-	7e-1	At5g45710	RHA1 (ROOT HANDEDNESS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.87	PtpAffx.202262.1.S1_at	pmrna4532	hypothetical protein	-	4e-5	At3g61740	SDG14 (SET DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	Ptp.1340.1.A1_at	CK093347	hypothetical protein	-	1e+0	At3g45020	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.89	PtpAffx.214463.1.S1_at	pmrna28128	-	-	2e+0	At1g20590	cyclin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.87	PtpAffx.213646.1.S1_at	pmrna26654	ammonium transporter	-	2e+0	At4g28730	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.89	PtpAffx.219071.1.S1_at	pmrna34877	hypothetical protein	-	2e-34	Atcg00350	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.89	PtpAffx.202546.1.S1_at	pmrna5106	hypothetical protein	-	2e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.87	PtpAffx.217296.1.S1_at	pmrna32498	hypothetical protein	-	1e+0	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.87	PtpAffx.212550.1.S1_at	pmrna24587	NAC domain protein, IPR003441	-	2e+0	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.215309.1.S1_at	pmrna29415	hypothetical protein	-	8e-1	At1g78020	senescence-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.87	PtpAffx.220706.1.S1_at	pmrna37120	hypothetical protein	-	2e+0	At3g56670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.87	PtpAffx.204331.1.S1_at	pmrna8523	lysine/histidine transporter	-	9e-4	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.151670.1.A1_at	DN486343	-	-	1e-1	At3g13350	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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