Co-expression analysis

Gene ID	PtpAffx.120762.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g42975: unknown protein (HF=6e-3)
Module size	6 genes
NF	0.56
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.120762.1.A1_at	CV262910	hypothetical protein	-	6e-3	At2g42975	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.93	PtpAffx.90356.2.A1_a_at	CV271797	hypothetical protein	-	2e-15	At1g62850	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	Ptp.1002.1.A1_at	CV241951	hypothetical protein	-	2e+0	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.90	Ptp.5291.1.S1_at	CN521303	-	-	2e-3	At1g72030	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.79920.1.A1_at	CK090376	hypothetical protein	-	1e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.151180.1.S1_at	CX654538	one helix protein 2	-	4e-26	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, Gma.12759.1.S1_at, orthologous to the query gene, PtpAffx.120762.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	Gma.12759.1.S1_at	At2g42975	-	-	6e-9	At2g42975	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	GmaAffx.27503.1.A1_at	At2g42975	-	-	2e+0	At4g08300	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	GmaAffx.43209.1.A1_at	At2g42975	-	-	7e-1	At3g03405	-	O.I.	H.G.	S.X.	Please select
0.77	90.3	GmaAffx.67137.1.S1_at	At2g42975	-	-	4e+0	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	GmaAffx.32901.3.S1_at	At2g42975	-	-	9e-1	At3g09750	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.12748.1.S1_at	At2g42975	-	-	9e-11	At1g62190	small conjugating protein ligase	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.12748.2.A1_at	At2g42975	-	-	9e-13	At4g27030	small conjugating protein ligase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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