Co-expression analysis

Gene ID PtpAffx.120762.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g42975: unknown protein (HF=6e-3)
Module size 6 genes
NF 0.56
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.120762.1.A1_atCV262910hypothetical protein-6e-3At2g42975unknown proteinO.I.H.G.S.X.
0.8096.00.93PtpAffx.90356.2.A1_a_atCV271797hypothetical protein-2e-15At1g62850-O.I.H.G.S.X.
0.6086.00.93Ptp.1002.1.A1_atCV241951hypothetical protein-2e+0At1g23730BCA3 (BETA CARBONIC ANHYDRASE 4)O.I.H.G.S.X.
0.5984.90.90Ptp.5291.1.S1_atCN521303--2e-3At1g72030GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.79920.1.A1_atCK090376hypothetical protein-1e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.
0.2034.60.94PtpAffx.151180.1.S1_atCX654538one helix protein 2-4e-26At1g34000OHP2 (ONE-HELIX PROTEIN 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.395.8GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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