Co-expression analysis

Gene ID	PtpAffx.120252.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g00730: ANL2 (ANTHOCYANINLESS 2) (HF=6e-6)
Module size	7 genes
NF	0.40
%ile	67.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.93	PtpAffx.120252.1.S1_s_at	CX171411	hypothetical protein	-	6e-6	At4g00730	ANL2 (ANTHOCYANINLESS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.212628.1.S1_at	pmrna24722	hypothetical protein	-	5e-12	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.5557.1.S1_at	CX186468	hypothetical protein	-	5e-32	At4g08920	CRY1 (CRYPTOCHROME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.22869.2.A1_at	DN484123	hypothetical protein	-	3e-28	At4g08920	CRY1 (CRYPTOCHROME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.213617.1.S1_at	pmrna26593	hypothetical protein	-	2e+0	At3g52070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.73710.1.S1_at	CX180923	white-brown-complex ABC transporter family	-	4e-22	At2g01320	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.94	PtpAffx.55625.2.S1_a_at	BU837418	hypothetical protein	-	2e-21	At3g01920	yrdC family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage