Co-expression analysis

Gene ID	PtpAffx.11966.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g15760: unknown protein (HF=1e-1)
Module size	8 genes
NF	0.55
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.93	PtpAffx.11966.1.A1_at	CV245062	hypothetical protein	-	1e-1	At3g15760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.94	PtpAffx.221308.1.S1_at	pmrna38101	hypothetical protein	-	1e-21	At1g72000	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.156340.1.S1_at	CX657667	hypothetical protein	-	1e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.94	PtpAffx.10087.1.A1_at	CV259549	hypothetical protein	-	1e-13	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.5844.1.S1_at	CX174548	hypothetical protein	-	9e-5	At1g68680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	PtpAffx.111048.1.S1_at	BU883776	hypothetical protein	-	2e-94	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.159657.1.A1_at	CV264120	hypothetical protein	-	4e-35	At5g26600	catalytic/ pyridoxal phosphate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.55786.1.S1_s_at	CA825382	hypothetical protein	-	5e-35	At4g09510	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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