Co-expression analysis

Gene ID PtpAffx.119354.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g25640: MATE efflux family protein (HF=1e-4)
Module size 10 genes
NF 0.28
%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.88PtpAffx.119354.1.A1_atBP935809hypothetical protein-1e-4At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.4471.90.94PtpAffx.141002.1.A1_atCV237864--1e+0At2g12557unknown proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.121699.1.A1_atCV230184hypothetical protein-3e-17At5g52960unknown proteinO.I.H.G.S.X.
0.3762.30.92Ptp.313.3.A1_s_atCV249535hypothetical protein-6e+0At2g03320unknown proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.679.1.S1_s_atCV276694peroxiredoxin-5e-41At3g26060ATPRX QO.I.H.G.S.X.
0.3357.50.97PtpAffx.679.1.S1_atCV276694peroxiredoxin-5e-41At3g26060ATPRX QO.I.H.G.S.X.
0.2747.10.96Ptp.5938.1.S1_atBU837105hypothetical protein-1e-20At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.2136.50.92Ptp.7199.1.S1_s_atCX654989hypothetical protein-2e-46At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.1525.30.93PtpAffx.6001.1.S1_atCV237297hypothetical protein-3e-43At2g28000CPN60A (CHAPERONIN-60ALPHA)O.I.H.G.S.X.
0.1219.60.95PtpAffx.18034.1.A1_atCV257108hypothetical protein-1e-8At3g21200unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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