Co-expression analysis

Gene ID	PtpAffx.119354.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g25640: MATE efflux family protein (HF=1e-4)
Module size	10 genes
NF	0.28
%ile	50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.88	PtpAffx.119354.1.A1_at	BP935809	hypothetical protein	-	1e-4	At4g25640	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.141002.1.A1_at	CV237864	-	-	1e+0	At2g12557	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.121699.1.A1_at	CV230184	hypothetical protein	-	3e-17	At5g52960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.92	Ptp.313.3.A1_s_at	CV249535	hypothetical protein	-	6e+0	At2g03320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.679.1.S1_s_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.679.1.S1_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	Ptp.5938.1.S1_at	BU837105	hypothetical protein	-	1e-20	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.92	Ptp.7199.1.S1_s_at	CX654989	hypothetical protein	-	2e-46	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.6001.1.S1_at	CV237297	hypothetical protein	-	3e-43	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.95	PtpAffx.18034.1.A1_at	CV257108	hypothetical protein	-	1e-8	At3g21200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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