Co-expression analysis

Gene ID PtpAffx.1193.1.S1_at
Gene name coniferylaldehyde 5- hydroxylase
Homology with ArabidopsisSimilar to At4g36220: FAH1 (FERULIC ACID 5-HYDROXYLASE 1) (HF=6e-5)
Module size 6 genes
NF 0.43
%ile 72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.93PtpAffx.1193.1.S1_atCV227263coniferylaldehyde 5- hydroxylase-6e-5At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.
0.6791.10.93Ptp.5663.1.S1_s_atCN549279hypothetical protein-2e-3At4g26400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5078.60.94PtpAffx.2427.1.S1_atCV274393hypothetical protein-2e-19At4g22680MYB85 (myb domain protein 85)O.I.H.G.S.X.
0.3357.50.94PtpAffx.283.1.A1_x_atCV226943hypothetical protein-5e-96At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.3153.70.94PtpAffx.283.14.A1_x_atCV272972hypothetical protein-2e-34At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.1729.10.94PtpAffx.8047.1.A1_atCV265327hypothetical protein-3e-2At2g36610ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.60.97Ptp.3758.1.S1_atCV251606hypothetical protein-2e-11At2g16700ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)O.I.H.G.S.X.
0.4774.60.92Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.4067.00.93Ptp.636.1.S1_s_atDN490114--2e+0At3g59370unknown proteinO.I.H.G.S.X.
0.4067.00.94Ptp.1701.1.S1_s_atCK093047glycosyltransferase, CAZy family GT8-1e-8At3g50760GATL2 (Galacturonosyltransferase-like 2)O.I.H.G.S.X.
0.3863.70.91Ptp.7749.1.S1_atBU833252hypothetical protein-2e-9At3g54140PTR1 (PEPTIDE TRANSPORTER 1)O.I.H.G.S.X.
0.3863.70.92Ptp.329.1.S1_s_atCV232763--2e+0At2g36610ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.3661.60.92Ptp.5663.1.S1_atCN549279hypothetical protein-2e-3At4g26400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3661.60.93Ptp.3084.1.S1_s_atCF228744hypothetical protein-3e-5At2g01660PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)O.I.H.G.S.X.
0.3255.20.89Ptp.5644.1.S1_atDN483999hypothetical protein-2e+0At3g54490RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)O.I.H.G.S.X.
0.3153.70.90PtpAffx.12403.1.S1_atCV228639hypothetical protein-5e-17At2g22800HAT9O.I.H.G.S.X.
0.3153.70.93Ptp.6417.1.S1_s_atCK089299hypothetical protein-1e-1At3g54120reticulon family protein (RTNLB12)O.I.H.G.S.X.
0.3153.70.94Ptp.2441.1.S1_x_atCV225767hypothetical protein-2e-38At3g59480pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3052.00.91Ptp.2023.1.S1_s_atCK087912hypothetical protein-1e+0At5g54530unknown proteinO.I.H.G.S.X.
0.2950.50.88PtpAffx.2048.1.S1_x_atCV260061hypothetical protein-1e+0At5g06070RBE (RABBIT EARS)O.I.H.G.S.X.
0.2850.50.83PtpAffx.466.1.S1_atCV245175precursor of carboxylase h-protein 2, glycine decarboxylase complex-8e-6At2g35120glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.2747.10.89PtpAffx.283.2.A1_x_atCV227694--5e-3At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.2747.10.94Ptp.5810.1.S1_s_atCF232478hypothetical protein-7e-37At1g23480ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)O.I.H.G.S.X.
0.2543.60.80PtpAffx.14180.1.S1_atCV230217hypothetical protein-6e-1At1g02640BXL2 (BETA-XYLOSIDASE 2)O.I.H.G.S.X.
0.2543.60.85Ptp.5394.1.S1_atCV226709coniferylaldehyde 5- hydroxylase-8e-17At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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