Co-expression analysis

Gene ID PtpAffx.1193.1.S1_at
Gene name coniferylaldehyde 5- hydroxylase
Homology with ArabidopsisSimilar to At4g36220: FAH1 (FERULIC ACID 5-HYDROXYLASE 1) (HF=6e-5)
Module size 6 genes
NF 0.43
%ile 72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.93PtpAffx.1193.1.S1_atCV227263coniferylaldehyde 5- hydroxylase-6e-5At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.
0.6791.10.93Ptp.5663.1.S1_s_atCN549279hypothetical protein-2e-3At4g26400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5078.60.94PtpAffx.2427.1.S1_atCV274393hypothetical protein-2e-19At4g22680MYB85 (myb domain protein 85)O.I.H.G.S.X.
0.3357.50.94PtpAffx.283.1.A1_x_atCV226943hypothetical protein-5e-96At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.3153.70.94PtpAffx.283.14.A1_x_atCV272972hypothetical protein-2e-34At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.1729.10.94PtpAffx.8047.1.A1_atCV265327hypothetical protein-3e-2At2g36610ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614045_at, orthologous to the query gene, PtpAffx.1193.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81614045_atAt4g36220hypothetical protein LOC100267863-8e-11At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)O.I.H.G.S.X.
0.6585.01607713_s_atAt4g36220serine hydrolase-like-1e-1At4g26210mitochondrial ATP synthase g subunit family proteinO.I.H.G.S.X.
0.6384.31618355_atAt4g36220--1e+0At2g16750protein kinase family proteinO.I.H.G.S.X.
0.6283.31613265_s_atAt4g36220hypothetical protein LOC100251662-9e-9At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.5879.81610363_atAt4g36220hypothetical protein LOC100267452-9e-32At3g62150PGP21 (P-GLYCOPROTEIN 21)O.I.H.G.S.X.
0.5577.31615458_atAt4g36220hypothetical protein LOC100255664-2e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.5475.71612482_atAt4g36220hypothetical protein LOC100258468-1e-9At1g60440ATPANK1 (PANTOTHENATE KINASE 1)O.I.H.G.S.X.
0.5173.21609984_atAt4g36220hypothetical protein LOC100262346-1e+0At4g15093catalytic LigB subunit of aromatic ring-opening dioxygenase familyO.I.H.G.S.X.
0.4868.81617361_atAt4g36220hypothetical protein LOC100244017-3e-50At4g35630PSATO.I.H.G.S.X.
0.4564.61614133_atAt4g36220hypothetical protein LOC100255873-5e-2At1g43800acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.4464.11607697_atAt4g36220--4e-47At1g20270oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4464.11615694_atAt4g36220hypothetical protein LOC100257251-1e+0At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4361.51614141_atAt4g36220hypothetical protein LOC100265131-1e-9At2g31090unknown proteinO.I.H.G.S.X.
0.4361.51621937_atAt4g36220hypothetical protein LOC100245655-2e-1At4g02810unknown proteinO.I.H.G.S.X.
0.3650.71618716_atAt4g36220similar to Os06g0665100-1e-22At5g44730haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3345.71620725_atAt4g36220hypothetical protein LOC100249240-4e-1At4g37445-O.I.H.G.S.X.
0.3039.41611759_atAt4g36220hypothetical protein LOC100258468-4e-13At1g60440ATPANK1 (PANTOTHENATE KINASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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