Co-expression analysis

Gene ID	PtpAffx.1193.1.S1_at
Gene name	coniferylaldehyde 5- hydroxylase
Homology with Arabidopsis	Similar to At4g36220: FAH1 (FERULIC ACID 5-HYDROXYLASE 1) (HF=6e-5)
Module size	6 genes
NF	0.43
%ile	72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.93	PtpAffx.1193.1.S1_at	CV227263	coniferylaldehyde 5- hydroxylase	-	6e-5	At4g36220	FAH1 (FERULIC ACID 5-HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	Ptp.5663.1.S1_s_at	CN549279	hypothetical protein	-	2e-3	At4g26400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.2427.1.S1_at	CV274393	hypothetical protein	-	2e-19	At4g22680	MYB85 (myb domain protein 85)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.283.1.A1_x_at	CV226943	hypothetical protein	-	5e-96	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.283.14.A1_x_at	CV272972	hypothetical protein	-	2e-34	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	PtpAffx.8047.1.A1_at	CV265327	hypothetical protein	-	3e-2	At2g36610	ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1614045_at, orthologous to the query gene, PtpAffx.1193.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1614045_at	At4g36220	hypothetical protein LOC100267863	-	8e-11	At4g36220	FAH1 (FERULIC ACID 5-HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1607713_s_at	At4g36220	serine hydrolase-like	-	1e-1	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	1618355_at	At4g36220	-	-	1e+0	At2g16750	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.62	83.3	1613265_s_at	At4g36220	hypothetical protein LOC100251662	-	9e-9	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	1610363_at	At4g36220	hypothetical protein LOC100267452	-	9e-32	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1615458_at	At4g36220	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1612482_at	At4g36220	hypothetical protein LOC100258468	-	1e-9	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.51	73.2	1609984_at	At4g36220	hypothetical protein LOC100262346	-	1e+0	At4g15093	catalytic LigB subunit of aromatic ring-opening dioxygenase family	O.I.	H.G.	S.X.	Please select
0.48	68.8	1617361_at	At4g36220	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	O.I.	H.G.	S.X.	Please select
0.45	64.6	1614133_at	At4g36220	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607697_at	At4g36220	-	-	4e-47	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615694_at	At4g36220	hypothetical protein LOC100257251	-	1e+0	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1614141_at	At4g36220	hypothetical protein LOC100265131	-	1e-9	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621937_at	At4g36220	hypothetical protein LOC100245655	-	2e-1	At4g02810	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1618716_at	At4g36220	similar to Os06g0665100	-	1e-22	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620725_at	At4g36220	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	1611759_at	At4g36220	hypothetical protein LOC100258468	-	4e-13	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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