CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.1193.1.S1_at

Gene name coniferylaldehyde 5- hydroxylase
Homology with Arabidopsis Similar to At4g36220: FAH1 (FERULIC ACID 5-HYDROXYLASE 1) (HF=6e-5)

Module size 6 genes

NF 0.43

%ile 72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 0.93 PtpAffx.1193.1.S1_at CV227263 coniferylaldehyde 5- hydroxylase - 6e-5 At4g36220 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) O.I. H.G. S.X.
0.67 91.1 0.93 Ptp.5663.1.S1_s_at CN549279 hypothetical protein - 2e-3 At4g26400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.2427.1.S1_at CV274393 hypothetical protein - 2e-19 At4g22680 MYB85 (myb domain protein 85) O.I. H.G. S.X.
0.33 57.5 0.94 PtpAffx.283.1.A1_x_at CV226943 hypothetical protein - 5e-96 At5g20830 SUS1 (SUCROSE SYNTHASE 1) O.I. H.G. S.X.
0.31 53.7 0.94 PtpAffx.283.14.A1_x_at CV272972 hypothetical protein - 2e-34 At5g20830 SUS1 (SUCROSE SYNTHASE 1) O.I. H.G. S.X.
0.17 29.1 0.94 PtpAffx.8047.1.A1_at CV265327 hypothetical protein - 3e-2 At2g36610 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.7 97.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g36220, orthologous to the query gene, PtpAffx.1193.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g36220 829779 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. O.I. H.G. S.X.
0.57 73.8 At4g34120 829558 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BAOPMF O.I. H.G. S.X.
0.40 50.8 At1g74640 843803 unknown protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPAO O.I. H.G. S.X.
0.40 50.8 At5g04260 830305 WCRKC2 (WCRKC THIOREDOXIN 2) Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif. O.I. H.G. S.X.
0.33 38.1 At4g26130 828719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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